sinan - PhD Scholar & First Stage Researcher – R1

PhD Scholar; Biomedical Engineering

Profile Picture

Muhammad Sinan

PhD Scholar and First Stage Researcher – R1

Institute of Fundamental and Technological Research, POLISH ACADEMY OF SCIENCES

About Me

I completed BS Mathematics degree in the period 2016 – 2020 at University of Swat, Pakistan under the supervision of Prof. dr. Amir Khan. For master’s degree program (Master of Science in Mathematics), I earned a fully funded scholarship at University of Electronic Science and Technology of China (UESTC), Chengdu, China in the period 2021 – 2024 under the supervision of Prof. Dr. Leng Jinsong. In the duration of my MSc program, I have earned two awards: First prize in Academic Achievement Award in the School of Mathematical Sciences – SMS at UESTC based on academic achievements in 2022. Furthermore, I obtained a Second rank Award for Outstanding Graduate Student at university in 2022. During my BSC and MSc programs, I have worked in the area of Mathematical Biology, including computational and mathematical analysis of infection spread. I published several research papers and established international research collaborations (see publication list). At IPPT PAN I am employed as a researcher on the National Agency for Academic Exchange (NAWA) titled “Systems biology analysis of multi-scale innate immune defences against bacterial pathogens” under the supervision of Prof. Paweł Paszek. I joined TIB PAN on February 22, 2025, working in collaboration with dr. Juan Redondo who is responsible for implementation of experimental work, while I am responsible for the computational and mathematical analysis of the data. Furthermore, I am also involved in a research collaboration with dr. Vishma Pratap Sur, MSCF/ERA Fellow from our laboratory, my role is the implementation of machine learning algorithms for the validation of antibacterial peptides. Currently, I am enrolled in courses: Statistics and Data analysis, advance methods in machine learning, Biopolymers in regenerative medicine, Fundamentals of intellectual property law for scientists and finally, I have two seminars to present in second semester.

Research Skills

  • Cell Segmentation
  • Tracking
  • Quantification
  • Characterization
  • Research Methodology
  • Statistical Modeling
  • Academic Writing

Programming

  • Python
  • MATLAB

Data Science

  • Deep Learning
  • Data Visualization
  • Statistical Analysis
  • Machine Learning

Tools & Libraries

  • Pandas, NumPy
  • Scikit-learn
  • TensorFlow/PyTorch
  • Matplotlib/Plotly
  • Multi indexed dataframes

Research & Publications

Explore my academic contributions and research publications

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Publications
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Research Interests

Machine Learning
Statistical Modeling
Computational Biology
Computer Vision

Projects & Software

Custom tools and data science projects I've developed

Video Tutorials

Step-by-step guides for academic research and technical tools

How to use Mendeley
10:15

How to Use Mendeley Reference Manager

A comprehensive guide to getting started with Mendeley for managing your research references.

Reference Management Tutorial
MS Word Academic Writing
18:20

Advanced MS Word for Academic Writing

Learn to insert and manage equations, figures, and tables with proper linkable captions in Microsoft Word.

Academic Writing Tutorial
Access Academic Materials
12:45

How to Access Academic Materials

Guide on accessing thesis and research papers at UESTC and other academic institutions.

Academic Resources Tutorial

Blog & Insights

Exploring the intersection of research, technology, and data science

Titanic Dataset Analysis
Data Science
July 23, 2025 18 min read

Titanic Dataset Analysis: A Complete Data Science Pipeline

From data understanding to deployment - A comprehensive 5-phase approach to machine learning with the classic Titanic survival prediction challenge, including feature engineering, model comparison, and Tkinter application deployment.

Read More

Get In Touch

Let's discuss research collaborations, projects, or academic opportunities

Email

msinan click to see full email address

Location

Institute of Fundamental Technological Research, POLISH ACADEMY OF SCIENCES
Biosystems and Soft Matter, Laboratory of Modeling in Biology and Medicine (PMBM),Warsaw, Poland

Office Hours

Monday - Friday
08:00 AM - 045:00 PM