PhD student · Systems biology

Sinan. M.

Institute of Fundamental Technological Research IPPT, POLISH ACADEMY OF SCIENCES PAS

Single cell biology

My research interests sit at the intersection of systems biology and computational image analysis. I am interested in how individual cells respond over time, and how we can study those responses through microscopy and quantitative methods.

My focus includes NF-κB dynamics, deep learning for image segmentation, and the analysis of single-cell time series.

Explore my research Curriculum vitae Email

Research interests

NF-κB dynamics
Microscopy
Deep learning
Single-cell analysis

Selected research

All projects

Systems biologyTemplate

NF-κB signaling dynamics

A space for research into cellular signaling and how responses unfold over time.

Image analysisTemplate

Microscopy & segmentation

A space for image analysis workflows that connect microscopy with quantitative measurements.

Quantitative analysisTemplate

Single-cell time series

A space for exploring individual cellular trajectories and variation across a population.

Project templates based on the supplied research interests. Schematics are illustrative, not experimental results.

News & updates

Along the way

Forthcoming

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From the notebook

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Research notesPlaceholder

A place for research notes

Notes on methods, ideas, and the work between the figures. The first post is still to come.

Selected publications

All publications

2023Journal article

Journal article

Analysis of the mathematical model of cutaneous leishmaniasis disease

Muhammad Sinan, Khursheed J Ansari, Asia Kanwal, Kamal Shah, Thabet Abdeljawad, Bahaaeldin Abdalla, others

Alexandria Engineering Journal

Abstract

Analysis of the mathematical model of cutaneous leishmaniasis disease.

BibTeX

@article{sinan2023analysis,
  title={Analysis of the mathematical model of cutaneous leishmaniasis disease},
  author={Sinan, Muhammad and Ansari, Khursheed J and Kanwal, Asia and Shah, Kamal and Abdeljawad, Thabet and Abdalla, Bahaaeldin and others},
  journal={Alexandria Engineering Journal},
  volume={72},
  pages={117--134},
  year={2023},
  publisher={Elsevier}
}

2022Journal article

Journal article

Fractional order mathematical modeling of typhoid fever disease

Muhammad Sinan, Kamal Shah, Poom Kumam, Ibrahim Mahariq, Khursheed J Ansari, Zubair Ahmad, Zahir Shah

Results in Physics

Abstract

Fractional order mathematical modeling of typhoid fever disease.

BibTeX

@article{sinan2022fractional,
  title={Fractional order mathematical modeling of typhoid fever disease},
  author={Sinan, Muhammad and Shah, Kamal and Kumam, Poom and Mahariq, Ibrahim and Ansari, Khursheed J and Ahmad, Zubair and Shah, Zahir},
  journal={Results in Physics},
  volume={32},
  pages={105044},
  year={2022},
  publisher={Elsevier}
}

2021Journal article

Journal article

Stability analysis and optimal control of Covid-19 pandemic SEIQR fractional mathematical model with harmonic mean type incidence rate and treatment

Muhammad Sinan, Amjad Ali, Kamal Shah, Taghreed A Assiri, Taher A Nofal

Results in Physics

Abstract

Stability analysis and optimal control of Covid-19 pandemic SEIQR fractional mathematical model with harmonic mean type incidence rate and treatment.

BibTeX

@article{sinan2021stability,
  title={Stability analysis and optimal control of Covid-19 pandemic SEIQR fractional mathematical model with harmonic mean type incidence rate and treatment},
  author={Sinan, Muhammad and Ali, Amjad and Shah, Kamal and Assiri, Taghreed A and Nofal, Taher A},
  journal={Results in Physics},
  volume={22},
  pages={103873},
  year={2021},
  publisher={Elsevier}
}